PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26345A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 209aa    MW: 23247 Da    PI: 8.1935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26345AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141460146
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46
                               rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++
  Oropetium_20150105_26345A 14 RGPWSQEEDAILRSFVQRFGNAgNWIALPQKAGLKRCGKSCRLRWLN 60
                               89******************99***********************98 PP

2Myb_DNA-binding28.82.8e-09861111946
                                TTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  19 lGggtWktIartmgkgRtlkqcksrwqk 46 
                                 G++ W+ Ia++++ gRt++++k++w++
  Oropetium_20150105_26345A  86 IGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                                6888.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.103966IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-161260IPR009057Homeodomain-like
SMARTSM007172.2E-1213115IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-1914114IPR009057Homeodomain-like
PfamPF002491.1E-121460IPR001005SANT/Myb domain
CDDcd001671.41E-61660No hitNo description
PROSITE profilePS500907.08563113IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-1285114IPR009057Homeodomain-like
PfamPF002491.3E-785111IPR001005SANT/Myb domain
CDDcd001678.29E-689113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRSPCCDKT RVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN  60
XXXXXXXXXX XXXXXXXXXX XXXXEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRFLAA  120
SAVRDGTPXX XXXXXXXSSE DDATASAGKQ PTKDDRDSSP APPPTPSFAN PDIAAISAAD  180
DDDELMSYVA PTVQCEYFLE LVQLEAFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-13141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-140AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675095.18e-65PREDICTED: myb-related protein Zm38-like
TrEMBLA0A096SUS39e-65A0A096SUS3_MAIZE; Uncharacterized protein
STRINGGRMZM2G167829_P013e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-48myb domain protein 37